Projects
AMR in the Hospital
Case Study of the evolution of Daptomycin in SEpi following prolonged antibiotic exposure
Antimalarial Resistance in Ethiopia
Estimating the prevalence of antimalarial mutations in Ethiopia across time and space
COVID19 IFR Re-estimation
Estimating the COVID-19 first wave IFR using serologic data accounting for seroreversion
DISCent: Spatial Inbreeding Estimation
An algorithm for detecting deme inbreeding spatial coefficients from recombining pathogen genetic data
Vivax in the DRC
Determing who was being infected, where infections were occuring, and where they originated
COVIDCurve: COVID-19 Statistical Modeling
Bayesian statistical model for estimating age-based infection fatality ratios from serologic data
polySimIBD: A Simple Malaria Genetic Model
Spatial Structured Wright Fisher Model for Malaria Population Genetic Simulations
Antimalarial Resistance in the DRC
Exploring population structure attributed to antimalarial resistance in the Democratic Republic of the Congo
Tanzania-Zanzibar Transmission
Coupling epidemiologic analysis with relatedness metrics (identity by descent) and population dynamics, we show that there is active …
What Makes Pandemic Prediction Difficult?
Improving Pandemic Prediction using agent-based models and deep-neural networks