Reference

All functions
argraph	The Ancestral Recombination Graph This S3 class represents the ARG from the realized simulation
bvtree	A Simplified Tree: bvtree This S3 class represents the bvtree which is a simple tree marginal representation
bvtreeToNewick()	Convert bvtree to Newick Tree Format
get_arg()	Get ancestral recombination graph from forward simulations
get_bvibd()	Get Between-Host Identity by Descent from forward simulations
get_effective_coi()	Extract Effective COI by Loci from SWF Simulation for a Single Host
get_within_ibd()	Calculate Within-Host IBD
polySimIBD	Structured Wright Fisher Simulator for Malarai Genetics
sim_swf()	The Structured Wright Fisher Model for IBD
subset_bvtree()	Subset an object of class bvtree
swfsim	The Structured Wright Fisher Model Output This S3 class represents realization of the Discrete-Time Discrete-Loci Spatial Wright Fisher Malaria Model.